***** Step 1. Building the CRAM library           *****
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/cram/cram_codecs.c -o ./objects/cram/cram_codecs.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/cram/cram_decode.c -o ./objects/cram/cram_decode.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/cram/cram_encode.c -o ./objects/cram/cram_encode.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/cram/cram_index.c -o ./objects/cram/cram_index.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/cram/cram_io.c -o ./objects/cram/cram_io.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/cram/cram_samtools.c -o ./objects/cram/cram_samtools.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/cram/cram_stats.c -o ./objects/cram/cram_stats.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/cram/files.c -o ./objects/cram/files.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/cram/md5.c -o ./objects/cram/md5.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/cram/mFILE.c -o ./objects/cram/mFILE.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/cram/open_trace_file.c -o ./objects/cram/open_trace_file.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/cram/pooled_alloc.c -o ./objects/cram/pooled_alloc.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/cram/rANS_static.c -o ./objects/cram/rANS_static.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/cram/sam_header.c -o ./objects/cram/sam_header.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/cram/string_alloc.c -o ./objects/cram/string_alloc.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/cram/thread_pool.c -o ./objects/cram/thread_pool.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/cram/vlen.c -o ./objects/cram/vlen.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/cram/zfio.c -o ./objects/cram/zfio.o
***** [OK] CRAM library sucessfully generated     *****

***** Step 2. Building the HTSLIB library         *****
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/htslib/bgzf.c -o ./objects/htslib/bgzf.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/htslib/faidx.c -o ./objects/htslib/faidx.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/htslib/hfile.c -o ./objects/htslib/hfile.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/htslib/hfile_net.c -o ./objects/htslib/hfile_net.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/htslib/hts.c -o ./objects/htslib/hts.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/htslib/kfunc.c -o ./objects/htslib/kfunc.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/htslib/knetfile.c -o ./objects/htslib/knetfile.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/htslib/kstring.c -o ./objects/htslib/kstring.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/htslib/regidx.c -o ./objects/htslib/regidx.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/htslib/sam.c -o ./objects/htslib/sam.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/htslib/synced_bcf_reader.c -o ./objects/htslib/synced_bcf_reader.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/htslib/tbx.c -o ./objects/htslib/tbx.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/htslib/vcf.c -o ./objects/htslib/vcf.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/htslib/vcf_sweep.c -o ./objects/htslib/vcf_sweep.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/htslib/vcfutils.c -o ./objects/htslib/vcfutils.o
***** [OK] HTSLIB library sucessfully generated   *****

***** Step 3. Building the SAMTOOLS library       *****
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/samtools/bam_aux.c -o ./objects/samtools/bam_aux.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/samtools/bam.c -o ./objects/samtools/bam.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/samtools/bam_import.c -o ./objects/samtools/bam_import.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/samtools/bam_plbuf.c -o ./objects/samtools/bam_plbuf.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/samtools/sam.c -o ./objects/samtools/sam.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/samtools/sam_header.c -o ./objects/samtools/sam_header.o
***** [OK] SAMTOOLS library sucessfully generated *****

***** Step 4. Building the SeqCode suite          *****
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/buildChIPprofile.c -o ./objects/seqcode/buildChIPprofile.o 
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/account.c -o ./objects/seqcode/account.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/readargv_buildChIPprofile.c -o ./objects/seqcode/readargv_buildChIPprofile.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/RequestMemory.c -o ./objects/seqcode/RequestMemory.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/RequestMemoryBin.c -o ./objects/seqcode/RequestMemoryBin.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/GetFileSize.c -o ./objects/seqcode/GetFileSize.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/ReadChrFile.c -o ./objects/seqcode/ReadChrFile.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/Dictionary.c -o ./objects/seqcode/Dictionary.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/Output.c -o ./objects/seqcode/Output.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/ProcessGenome.c -o ./objects/seqcode/ProcessGenome.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/ReadSAMFile.c -o ./objects/seqcode/ReadSAMFile.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/ColorManager.c -o ./objects/seqcode/ColorManager.o
gcc  -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 -o bin/buildChIPprofile ./objects/seqcode/buildChIPprofile.o ./objects/seqcode/account.o ./objects/seqcode/readargv_buildChIPprofile.o ./objects/seqcode/RequestMemory.o ./objects/seqcode/RequestMemoryBin.o ./objects/seqcode/GetFileSize.o ./objects/seqcode/ReadChrFile.o ./objects/seqcode/Dictionary.o ./objects/seqcode/Output.o ./objects/seqcode/ProcessGenome.o ./objects/seqcode/ReadSAMFile.o ./objects/seqcode/ColorManager.o ./objects/cram/cram_codecs.o ./objects/cram/cram_decode.o ./objects/cram/cram_encode.o ./objects/cram/cram_index.o ./objects/cram/cram_io.o ./objects/cram/cram_samtools.o ./objects/cram/cram_stats.o ./objects/cram/files.o ./objects/cram/md5.o ./objects/cram/mFILE.o ./objects/cram/open_trace_file.o ./objects/cram/pooled_alloc.o ./objects/cram/rANS_static.o ./objects/cram/sam_header.o ./objects/cram/string_alloc.o ./objects/cram/thread_pool.o ./objects/cram/vlen.o ./objects/cram/zfio.o ./objects/htslib/bgzf.o ./objects/htslib/faidx.o ./objects/htslib/hfile.o ./objects/htslib/hfile_net.o ./objects/htslib/hts.o ./objects/htslib/kfunc.o ./objects/htslib/knetfile.o ./objects/htslib/kstring.o ./objects/htslib/regidx.o ./objects/htslib/sam.o ./objects/htslib/synced_bcf_reader.o ./objects/htslib/tbx.o ./objects/htslib/vcf.o ./objects/htslib/vcf_sweep.o ./objects/htslib/vcfutils.o ./objects/samtools/bam_aux.o ./objects/samtools/bam.o ./objects/samtools/bam_import.o ./objects/samtools/bam_plbuf.o ./objects/samtools/sam.o ./objects/samtools/sam_header.o -lm -lz -pthread
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/combineChIPprofiles.c -o ./objects/seqcode/combineChIPprofiles.o 
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/readargv_combineChIPprofiles.c -o ./objects/seqcode/readargv_combineChIPprofiles.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/CombineGenomes.c -o ./objects/seqcode/CombineGenomes.o
gcc  -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 -o bin/combineChIPprofiles ./objects/seqcode/combineChIPprofiles.o ./objects/seqcode/account.o ./objects/seqcode/readargv_combineChIPprofiles.o ./objects/seqcode/RequestMemory.o ./objects/seqcode/RequestMemoryBin.o ./objects/seqcode/GetFileSize.o ./objects/seqcode/ReadChrFile.o ./objects/seqcode/Dictionary.o ./objects/seqcode/Output.o ./objects/seqcode/CombineGenomes.o ./objects/seqcode/ReadSAMFile.o ./objects/seqcode/ColorManager.o ./objects/cram/cram_codecs.o ./objects/cram/cram_decode.o ./objects/cram/cram_encode.o ./objects/cram/cram_index.o ./objects/cram/cram_io.o ./objects/cram/cram_samtools.o ./objects/cram/cram_stats.o ./objects/cram/files.o ./objects/cram/md5.o ./objects/cram/mFILE.o ./objects/cram/open_trace_file.o ./objects/cram/pooled_alloc.o ./objects/cram/rANS_static.o ./objects/cram/sam_header.o ./objects/cram/string_alloc.o ./objects/cram/thread_pool.o ./objects/cram/vlen.o ./objects/cram/zfio.o ./objects/htslib/bgzf.o ./objects/htslib/faidx.o ./objects/htslib/hfile.o ./objects/htslib/hfile_net.o ./objects/htslib/hts.o ./objects/htslib/kfunc.o ./objects/htslib/knetfile.o ./objects/htslib/kstring.o ./objects/htslib/regidx.o ./objects/htslib/sam.o ./objects/htslib/synced_bcf_reader.o ./objects/htslib/tbx.o ./objects/htslib/vcf.o ./objects/htslib/vcf_sweep.o ./objects/htslib/vcfutils.o ./objects/samtools/bam_aux.o ./objects/samtools/bam.o ./objects/samtools/bam_import.o ./objects/samtools/bam_plbuf.o ./objects/samtools/sam.o ./objects/samtools/sam_header.o -lm -lz -pthread
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/combineTSSmaps.c -o ./objects/seqcode/combineTSSmaps.o 
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/readargv_combineTSSmaps.c -o ./objects/seqcode/readargv_combineTSSmaps.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/ReadRefgeneFile2.c -o ./objects/seqcode/ReadRefgeneFile2.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/OutputR.c -o ./objects/seqcode/OutputR.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/OutputH.c -o ./objects/seqcode/OutputH.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/CombineTargetGenesMaps.c -o ./objects/seqcode/CombineTargetGenesMaps.o
gcc  -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 -o bin/combineTSSmaps ./objects/seqcode/combineTSSmaps.o ./objects/seqcode/account.o ./objects/seqcode/readargv_combineTSSmaps.o ./objects/seqcode/RequestMemory.o ./objects/seqcode/RequestMemoryBin.o ./objects/seqcode/GetFileSize.o ./objects/seqcode/ReadChrFile.o ./objects/seqcode/ReadRefgeneFile2.o ./objects/seqcode/Dictionary.o ./objects/seqcode/Output.o ./objects/seqcode/OutputR.o ./objects/seqcode/OutputH.o ./objects/seqcode/CombineTargetGenesMaps.o ./objects/seqcode/ReadSAMFile.o ./objects/seqcode/ColorManager.o ./objects/cram/cram_codecs.o ./objects/cram/cram_decode.o ./objects/cram/cram_encode.o ./objects/cram/cram_index.o ./objects/cram/cram_io.o ./objects/cram/cram_samtools.o ./objects/cram/cram_stats.o ./objects/cram/files.o ./objects/cram/md5.o ./objects/cram/mFILE.o ./objects/cram/open_trace_file.o ./objects/cram/pooled_alloc.o ./objects/cram/rANS_static.o ./objects/cram/sam_header.o ./objects/cram/string_alloc.o ./objects/cram/thread_pool.o ./objects/cram/vlen.o ./objects/cram/zfio.o ./objects/htslib/bgzf.o ./objects/htslib/faidx.o ./objects/htslib/hfile.o ./objects/htslib/hfile_net.o ./objects/htslib/hts.o ./objects/htslib/kfunc.o ./objects/htslib/knetfile.o ./objects/htslib/kstring.o ./objects/htslib/regidx.o ./objects/htslib/sam.o ./objects/htslib/synced_bcf_reader.o ./objects/htslib/tbx.o ./objects/htslib/vcf.o ./objects/htslib/vcf_sweep.o ./objects/htslib/vcfutils.o ./objects/samtools/bam_aux.o ./objects/samtools/bam.o ./objects/samtools/bam_import.o ./objects/samtools/bam_plbuf.o ./objects/samtools/sam.o ./objects/samtools/sam_header.o -lm -lz -pthread
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/combineTSSplots.c -o ./objects/seqcode/combineTSSplots.o 
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/readargv_combineTSSplots.c -o ./objects/seqcode/readargv_combineTSSplots.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/CombineTargetGenes.c -o ./objects/seqcode/CombineTargetGenes.o
gcc  -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 -o bin/combineTSSplots ./objects/seqcode/combineTSSplots.o ./objects/seqcode/account.o ./objects/seqcode/readargv_combineTSSplots.o ./objects/seqcode/RequestMemory.o ./objects/seqcode/RequestMemoryBin.o ./objects/seqcode/GetFileSize.o ./objects/seqcode/ReadChrFile.o ./objects/seqcode/ReadRefgeneFile2.o ./objects/seqcode/Dictionary.o ./objects/seqcode/Output.o ./objects/seqcode/OutputR.o ./objects/seqcode/CombineTargetGenes.o ./objects/seqcode/ReadSAMFile.o ./objects/seqcode/ColorManager.o ./objects/cram/cram_codecs.o ./objects/cram/cram_decode.o ./objects/cram/cram_encode.o ./objects/cram/cram_index.o ./objects/cram/cram_io.o ./objects/cram/cram_samtools.o ./objects/cram/cram_stats.o ./objects/cram/files.o ./objects/cram/md5.o ./objects/cram/mFILE.o ./objects/cram/open_trace_file.o ./objects/cram/pooled_alloc.o ./objects/cram/rANS_static.o ./objects/cram/sam_header.o ./objects/cram/string_alloc.o ./objects/cram/thread_pool.o ./objects/cram/vlen.o ./objects/cram/zfio.o ./objects/htslib/bgzf.o ./objects/htslib/faidx.o ./objects/htslib/hfile.o ./objects/htslib/hfile_net.o ./objects/htslib/hts.o ./objects/htslib/kfunc.o ./objects/htslib/knetfile.o ./objects/htslib/kstring.o ./objects/htslib/regidx.o ./objects/htslib/sam.o ./objects/htslib/synced_bcf_reader.o ./objects/htslib/tbx.o ./objects/htslib/vcf.o ./objects/htslib/vcf_sweep.o ./objects/htslib/vcfutils.o ./objects/samtools/bam_aux.o ./objects/samtools/bam.o ./objects/samtools/bam_import.o ./objects/samtools/bam_plbuf.o ./objects/samtools/sam.o ./objects/samtools/sam_header.o -lm -lz -pthread
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/computemaxsignal.c -o ./objects/seqcode/computemaxsignal.o 
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/readargv_computemaxsignal.c -o ./objects/seqcode/readargv_computemaxsignal.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/ReadBGFile.c -o ./objects/seqcode/ReadBGFile.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/ProcessGenesMax.c -o ./objects/seqcode/ProcessGenesMax.o
gcc  -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 -o bin/computemaxsignal ./objects/seqcode/computemaxsignal.o ./objects/seqcode/account.o ./objects/seqcode/readargv_computemaxsignal.o ./objects/seqcode/RequestMemory.o ./objects/seqcode/RequestMemoryBin.o ./objects/seqcode/GetFileSize.o ./objects/seqcode/ReadChrFile.o ./objects/seqcode/ReadRefgeneFile2.o ./objects/seqcode/Dictionary.o ./objects/seqcode/Output.o ./objects/seqcode/ReadBGFile.o ./objects/seqcode/ProcessGenesMax.o -lm
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/findPeaks.c -o ./objects/seqcode/findPeaks.o 
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/readargv_findPeaks.c -o ./objects/seqcode/readargv_findPeaks.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/ProcessGenomePeaks.c -o ./objects/seqcode/ProcessGenomePeaks.o
gcc  -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 -o bin/findPeaks ./objects/seqcode/findPeaks.o ./objects/seqcode/account.o ./objects/seqcode/readargv_findPeaks.o ./objects/seqcode/RequestMemory.o ./objects/seqcode/RequestMemoryBin.o ./objects/seqcode/GetFileSize.o ./objects/seqcode/ReadChrFile.o ./objects/seqcode/Dictionary.o ./objects/seqcode/Output.o ./objects/seqcode/ProcessGenomePeaks.o ./objects/seqcode/ReadSAMFile.o ./objects/cram/cram_codecs.o ./objects/cram/cram_decode.o ./objects/cram/cram_encode.o ./objects/cram/cram_index.o ./objects/cram/cram_io.o ./objects/cram/cram_samtools.o ./objects/cram/cram_stats.o ./objects/cram/files.o ./objects/cram/md5.o ./objects/cram/mFILE.o ./objects/cram/open_trace_file.o ./objects/cram/pooled_alloc.o ./objects/cram/rANS_static.o ./objects/cram/sam_header.o ./objects/cram/string_alloc.o ./objects/cram/thread_pool.o ./objects/cram/vlen.o ./objects/cram/zfio.o ./objects/htslib/bgzf.o ./objects/htslib/faidx.o ./objects/htslib/hfile.o ./objects/htslib/hfile_net.o ./objects/htslib/hts.o ./objects/htslib/kfunc.o ./objects/htslib/knetfile.o ./objects/htslib/kstring.o ./objects/htslib/regidx.o ./objects/htslib/sam.o ./objects/htslib/synced_bcf_reader.o ./objects/htslib/tbx.o ./objects/htslib/vcf.o ./objects/htslib/vcf_sweep.o ./objects/htslib/vcfutils.o ./objects/samtools/bam_aux.o ./objects/samtools/bam.o ./objects/samtools/bam_import.o ./objects/samtools/bam_plbuf.o ./objects/samtools/sam.o ./objects/samtools/sam_header.o -lm -lz -pthread
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/genomeDistribution.c -o ./objects/seqcode/genomeDistribution.o 
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/readargv_genomeDistribution.c -o ./objects/seqcode/readargv_genomeDistribution.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/ReadRefgeneFileMark.c -o ./objects/seqcode/ReadRefgeneFileMark.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/ProcessPeaksMarks.c -o ./objects/seqcode/ProcessPeaksMarks.o
gcc  -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 -o bin/genomeDistribution ./objects/seqcode/genomeDistribution.o ./objects/seqcode/account.o ./objects/seqcode/readargv_genomeDistribution.o ./objects/seqcode/RequestMemory.o ./objects/seqcode/RequestMemoryBin.o ./objects/seqcode/GetFileSize.o ./objects/seqcode/ReadChrFile.o ./objects/seqcode/Dictionary.o ./objects/seqcode/Output.o ./objects/seqcode/OutputR.o ./objects/seqcode/ReadRefgeneFileMark.o ./objects/seqcode/ProcessPeaksMarks.o ./objects/seqcode/ColorManager.o -lm
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/matchpeaks.c -o ./objects/seqcode/matchpeaks.o 
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/readargv_matchpeaks.c -o ./objects/seqcode/readargv_matchpeaks.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/ReadPeaksFile.c -o ./objects/seqcode/ReadPeaksFile.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/ProcessPeaksLists.c -o ./objects/seqcode/ProcessPeaksLists.o
gcc  -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 -o bin/matchpeaks ./objects/seqcode/matchpeaks.o ./objects/seqcode/account.o ./objects/seqcode/readargv_matchpeaks.o ./objects/seqcode/RequestMemory.o ./objects/seqcode/GetFileSize.o ./objects/seqcode/Output.o ./objects/seqcode/ReadPeaksFile.o ./objects/seqcode/Dictionary.o ./objects/seqcode/ProcessPeaksLists.o  -lm
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/matchpeaksgenes.c -o ./objects/seqcode/matchpeaksgenes.o 
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/readargv_matchpeaksgenes.c -o ./objects/seqcode/readargv_matchpeaksgenes.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/ProcessPeaks.c -o ./objects/seqcode/ProcessPeaks.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/ReadRefgeneFile.c -o ./objects/seqcode/ReadRefgeneFile.o
gcc  -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 -o bin/matchpeaksgenes ./objects/seqcode/matchpeaksgenes.o ./objects/seqcode/account.o ./objects/seqcode/readargv_matchpeaksgenes.o ./objects/seqcode/RequestMemory.o ./objects/seqcode/GetFileSize.o ./objects/seqcode/ProcessPeaks.o ./objects/seqcode/Output.o ./objects/seqcode/ReadRefgeneFile.o ./objects/seqcode/Dictionary.o -lm
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/processmacs.c -o ./objects/seqcode/processmacs.o 
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/readargv_processmacs.c -o ./objects/seqcode/readargv_processmacs.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/ProcessBG.c -o ./objects/seqcode/ProcessBG.o
gcc  -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 -o bin/processmacs ./objects/seqcode/processmacs.o ./objects/seqcode/account.o ./objects/seqcode/readargv_processmacs.o ./objects/seqcode/Dictionary.o ./objects/seqcode/Output.o ./objects/seqcode/ReadChrFile.o ./objects/seqcode/RequestMemory.o ./objects/seqcode/ProcessBG.o ./objects/seqcode/GetFileSize.o -lm
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/produceGENEmaps.c -o ./objects/seqcode/produceGENEmaps.o 
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/readargv_produceGENEmaps.c -o ./objects/seqcode/readargv_produceGENEmaps.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/ProcessTargetGenesGENEMaps.c -o ./objects/seqcode/ProcessTargetGenesGENEMaps.o
gcc  -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 -o bin/produceGENEmaps ./objects/seqcode/produceGENEmaps.o ./objects/seqcode/account.o ./objects/seqcode/readargv_produceGENEmaps.o ./objects/seqcode/RequestMemory.o ./objects/seqcode/RequestMemoryBin.o ./objects/seqcode/GetFileSize.o ./objects/seqcode/ReadChrFile.o ./objects/seqcode/ReadRefgeneFile2.o ./objects/seqcode/Dictionary.o ./objects/seqcode/Output.o ./objects/seqcode/OutputR.o ./objects/seqcode/OutputH.o ./objects/seqcode/ProcessTargetGenesGENEMaps.o ./objects/seqcode/ReadSAMFile.o ./objects/seqcode/ColorManager.o ./objects/cram/cram_codecs.o ./objects/cram/cram_decode.o ./objects/cram/cram_encode.o ./objects/cram/cram_index.o ./objects/cram/cram_io.o ./objects/cram/cram_samtools.o ./objects/cram/cram_stats.o ./objects/cram/files.o ./objects/cram/md5.o ./objects/cram/mFILE.o ./objects/cram/open_trace_file.o ./objects/cram/pooled_alloc.o ./objects/cram/rANS_static.o ./objects/cram/sam_header.o ./objects/cram/string_alloc.o ./objects/cram/thread_pool.o ./objects/cram/vlen.o ./objects/cram/zfio.o ./objects/htslib/bgzf.o ./objects/htslib/faidx.o ./objects/htslib/hfile.o ./objects/htslib/hfile_net.o ./objects/htslib/hts.o ./objects/htslib/kfunc.o ./objects/htslib/knetfile.o ./objects/htslib/kstring.o ./objects/htslib/regidx.o ./objects/htslib/sam.o ./objects/htslib/synced_bcf_reader.o ./objects/htslib/tbx.o ./objects/htslib/vcf.o ./objects/htslib/vcf_sweep.o ./objects/htslib/vcfutils.o ./objects/samtools/bam_aux.o ./objects/samtools/bam.o ./objects/samtools/bam_import.o ./objects/samtools/bam_plbuf.o ./objects/samtools/sam.o ./objects/samtools/sam_header.o -lm -lz -pthread
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/produceGENEplots.c -o ./objects/seqcode/produceGENEplots.o 
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/readargv_produceGENEplots.c -o ./objects/seqcode/readargv_produceGENEplots.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/ProcessTargetGenesGENE.c -o ./objects/seqcode/ProcessTargetGenesGENE.o
gcc  -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 -o bin/produceGENEplots ./objects/seqcode/produceGENEplots.o ./objects/seqcode/account.o ./objects/seqcode/readargv_produceGENEplots.o ./objects/seqcode/RequestMemory.o ./objects/seqcode/RequestMemoryBin.o ./objects/seqcode/GetFileSize.o ./objects/seqcode/ReadChrFile.o ./objects/seqcode/ReadRefgeneFile2.o ./objects/seqcode/Dictionary.o ./objects/seqcode/Output.o ./objects/seqcode/OutputR.o ./objects/seqcode/ProcessTargetGenesGENE.o ./objects/seqcode/ReadSAMFile.o ./objects/seqcode/ColorManager.o ./objects/cram/cram_codecs.o ./objects/cram/cram_decode.o ./objects/cram/cram_encode.o ./objects/cram/cram_index.o ./objects/cram/cram_io.o ./objects/cram/cram_samtools.o ./objects/cram/cram_stats.o ./objects/cram/files.o ./objects/cram/md5.o ./objects/cram/mFILE.o ./objects/cram/open_trace_file.o ./objects/cram/pooled_alloc.o ./objects/cram/rANS_static.o ./objects/cram/sam_header.o ./objects/cram/string_alloc.o ./objects/cram/thread_pool.o ./objects/cram/vlen.o ./objects/cram/zfio.o ./objects/htslib/bgzf.o ./objects/htslib/faidx.o ./objects/htslib/hfile.o ./objects/htslib/hfile_net.o ./objects/htslib/hts.o ./objects/htslib/kfunc.o ./objects/htslib/knetfile.o ./objects/htslib/kstring.o ./objects/htslib/regidx.o ./objects/htslib/sam.o ./objects/htslib/synced_bcf_reader.o ./objects/htslib/tbx.o ./objects/htslib/vcf.o ./objects/htslib/vcf_sweep.o ./objects/htslib/vcfutils.o ./objects/samtools/bam_aux.o ./objects/samtools/bam.o ./objects/samtools/bam_import.o ./objects/samtools/bam_plbuf.o ./objects/samtools/sam.o ./objects/samtools/sam_header.o -lm -lz -pthread
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/producePEAKmaps.c -o ./objects/seqcode/producePEAKmaps.o 
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/readargv_producePEAKmaps.c -o ./objects/seqcode/readargv_producePEAKmaps.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/ReadProcessPeaksMaps.c -o ./objects/seqcode/ReadProcessPeaksMaps.o
gcc  -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 -o bin/producePEAKmaps ./objects/seqcode/producePEAKmaps.o ./objects/seqcode/account.o ./objects/seqcode/readargv_producePEAKmaps.o ./objects/seqcode/RequestMemory.o ./objects/seqcode/RequestMemoryBin.o ./objects/seqcode/GetFileSize.o ./objects/seqcode/ReadChrFile.o ./objects/seqcode/Dictionary.o ./objects/seqcode/Output.o ./objects/seqcode/OutputH.o ./objects/seqcode/OutputR.o ./objects/seqcode/ReadProcessPeaksMaps.o ./objects/seqcode/ReadSAMFile.o ./objects/seqcode/ColorManager.o ./objects/cram/cram_codecs.o ./objects/cram/cram_decode.o ./objects/cram/cram_encode.o ./objects/cram/cram_index.o ./objects/cram/cram_io.o ./objects/cram/cram_samtools.o ./objects/cram/cram_stats.o ./objects/cram/files.o ./objects/cram/md5.o ./objects/cram/mFILE.o ./objects/cram/open_trace_file.o ./objects/cram/pooled_alloc.o ./objects/cram/rANS_static.o ./objects/cram/sam_header.o ./objects/cram/string_alloc.o ./objects/cram/thread_pool.o ./objects/cram/vlen.o ./objects/cram/zfio.o ./objects/htslib/bgzf.o ./objects/htslib/faidx.o ./objects/htslib/hfile.o ./objects/htslib/hfile_net.o ./objects/htslib/hts.o ./objects/htslib/kfunc.o ./objects/htslib/knetfile.o ./objects/htslib/kstring.o ./objects/htslib/regidx.o ./objects/htslib/sam.o ./objects/htslib/synced_bcf_reader.o ./objects/htslib/tbx.o ./objects/htslib/vcf.o ./objects/htslib/vcf_sweep.o ./objects/htslib/vcfutils.o ./objects/samtools/bam_aux.o ./objects/samtools/bam.o ./objects/samtools/bam_import.o ./objects/samtools/bam_plbuf.o ./objects/samtools/sam.o ./objects/samtools/sam_header.o -lm -lz -pthread
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/producePEAKplots.c -o ./objects/seqcode/producePEAKplots.o 
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/readargv_producePEAKplots.c -o ./objects/seqcode/readargv_producePEAKplots.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/ReadProcessPeaks.c -o ./objects/seqcode/ReadProcessPeaks.o
gcc  -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 -o bin/producePEAKplots ./objects/seqcode/producePEAKplots.o ./objects/seqcode/account.o ./objects/seqcode/readargv_producePEAKplots.o ./objects/seqcode/RequestMemory.o ./objects/seqcode/RequestMemoryBin.o ./objects/seqcode/GetFileSize.o ./objects/seqcode/ReadChrFile.o ./objects/seqcode/Dictionary.o ./objects/seqcode/Output.o ./objects/seqcode/OutputR.o ./objects/seqcode/ReadProcessPeaks.o ./objects/seqcode/ReadSAMFile.o ./objects/seqcode/ColorManager.o ./objects/cram/cram_codecs.o ./objects/cram/cram_decode.o ./objects/cram/cram_encode.o ./objects/cram/cram_index.o ./objects/cram/cram_io.o ./objects/cram/cram_samtools.o ./objects/cram/cram_stats.o ./objects/cram/files.o ./objects/cram/md5.o ./objects/cram/mFILE.o ./objects/cram/open_trace_file.o ./objects/cram/pooled_alloc.o ./objects/cram/rANS_static.o ./objects/cram/sam_header.o ./objects/cram/string_alloc.o ./objects/cram/thread_pool.o ./objects/cram/vlen.o ./objects/cram/zfio.o ./objects/htslib/bgzf.o ./objects/htslib/faidx.o ./objects/htslib/hfile.o ./objects/htslib/hfile_net.o ./objects/htslib/hts.o ./objects/htslib/kfunc.o ./objects/htslib/knetfile.o ./objects/htslib/kstring.o ./objects/htslib/regidx.o ./objects/htslib/sam.o ./objects/htslib/synced_bcf_reader.o ./objects/htslib/tbx.o ./objects/htslib/vcf.o ./objects/htslib/vcf_sweep.o ./objects/htslib/vcfutils.o ./objects/samtools/bam_aux.o ./objects/samtools/bam.o ./objects/samtools/bam_import.o ./objects/samtools/bam_plbuf.o ./objects/samtools/sam.o ./objects/samtools/sam_header.o -lm -lz -pthread
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/produceTESmaps.c -o ./objects/seqcode/produceTESmaps.o 
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/readargv_produceTESmaps.c -o ./objects/seqcode/readargv_produceTESmaps.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/ProcessTargetGenesTESMaps.c -o ./objects/seqcode/ProcessTargetGenesTESMaps.o
gcc  -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 -o bin/produceTESmaps ./objects/seqcode/produceTESmaps.o ./objects/seqcode/account.o ./objects/seqcode/readargv_produceTESmaps.o ./objects/seqcode/RequestMemory.o ./objects/seqcode/RequestMemoryBin.o ./objects/seqcode/GetFileSize.o ./objects/seqcode/ReadChrFile.o ./objects/seqcode/ReadRefgeneFile2.o ./objects/seqcode/Dictionary.o ./objects/seqcode/Output.o ./objects/seqcode/OutputR.o ./objects/seqcode/OutputH.o ./objects/seqcode/ProcessTargetGenesTESMaps.o ./objects/seqcode/ReadSAMFile.o ./objects/seqcode/ColorManager.o ./objects/cram/cram_codecs.o ./objects/cram/cram_decode.o ./objects/cram/cram_encode.o ./objects/cram/cram_index.o ./objects/cram/cram_io.o ./objects/cram/cram_samtools.o ./objects/cram/cram_stats.o ./objects/cram/files.o ./objects/cram/md5.o ./objects/cram/mFILE.o ./objects/cram/open_trace_file.o ./objects/cram/pooled_alloc.o ./objects/cram/rANS_static.o ./objects/cram/sam_header.o ./objects/cram/string_alloc.o ./objects/cram/thread_pool.o ./objects/cram/vlen.o ./objects/cram/zfio.o ./objects/htslib/bgzf.o ./objects/htslib/faidx.o ./objects/htslib/hfile.o ./objects/htslib/hfile_net.o ./objects/htslib/hts.o ./objects/htslib/kfunc.o ./objects/htslib/knetfile.o ./objects/htslib/kstring.o ./objects/htslib/regidx.o ./objects/htslib/sam.o ./objects/htslib/synced_bcf_reader.o ./objects/htslib/tbx.o ./objects/htslib/vcf.o ./objects/htslib/vcf_sweep.o ./objects/htslib/vcfutils.o ./objects/samtools/bam_aux.o ./objects/samtools/bam.o ./objects/samtools/bam_import.o ./objects/samtools/bam_plbuf.o ./objects/samtools/sam.o ./objects/samtools/sam_header.o -lm -lz -pthread
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/produceTESplots.c -o ./objects/seqcode/produceTESplots.o 
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/readargv_produceTESplots.c -o ./objects/seqcode/readargv_produceTESplots.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/ProcessTargetGenesTES.c -o ./objects/seqcode/ProcessTargetGenesTES.o
gcc  -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 -o bin/produceTESplots ./objects/seqcode/produceTESplots.o ./objects/seqcode/account.o ./objects/seqcode/readargv_produceTESplots.o ./objects/seqcode/RequestMemory.o ./objects/seqcode/RequestMemoryBin.o ./objects/seqcode/GetFileSize.o ./objects/seqcode/ReadChrFile.o ./objects/seqcode/ReadRefgeneFile2.o ./objects/seqcode/Dictionary.o ./objects/seqcode/Output.o ./objects/seqcode/OutputR.o ./objects/seqcode/ProcessTargetGenesTES.o ./objects/seqcode/ReadSAMFile.o ./objects/seqcode/ColorManager.o ./objects/cram/cram_codecs.o ./objects/cram/cram_decode.o ./objects/cram/cram_encode.o ./objects/cram/cram_index.o ./objects/cram/cram_io.o ./objects/cram/cram_samtools.o ./objects/cram/cram_stats.o ./objects/cram/files.o ./objects/cram/md5.o ./objects/cram/mFILE.o ./objects/cram/open_trace_file.o ./objects/cram/pooled_alloc.o ./objects/cram/rANS_static.o ./objects/cram/sam_header.o ./objects/cram/string_alloc.o ./objects/cram/thread_pool.o ./objects/cram/vlen.o ./objects/cram/zfio.o ./objects/htslib/bgzf.o ./objects/htslib/faidx.o ./objects/htslib/hfile.o ./objects/htslib/hfile_net.o ./objects/htslib/hts.o ./objects/htslib/kfunc.o ./objects/htslib/knetfile.o ./objects/htslib/kstring.o ./objects/htslib/regidx.o ./objects/htslib/sam.o ./objects/htslib/synced_bcf_reader.o ./objects/htslib/tbx.o ./objects/htslib/vcf.o ./objects/htslib/vcf_sweep.o ./objects/htslib/vcfutils.o ./objects/samtools/bam_aux.o ./objects/samtools/bam.o ./objects/samtools/bam_import.o ./objects/samtools/bam_plbuf.o ./objects/samtools/sam.o ./objects/samtools/sam_header.o -lm -lz -pthread
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/produceTSSmaps.c -o ./objects/seqcode/produceTSSmaps.o 
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/readargv_produceTSSmaps.c -o ./objects/seqcode/readargv_produceTSSmaps.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/ProcessTargetGenesMaps.c -o ./objects/seqcode/ProcessTargetGenesMaps.o
gcc  -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 -o bin/produceTSSmaps ./objects/seqcode/produceTSSmaps.o ./objects/seqcode/account.o ./objects/seqcode/readargv_produceTSSmaps.o ./objects/seqcode/RequestMemory.o ./objects/seqcode/RequestMemoryBin.o ./objects/seqcode/GetFileSize.o ./objects/seqcode/ReadChrFile.o ./objects/seqcode/ReadRefgeneFile2.o ./objects/seqcode/Dictionary.o ./objects/seqcode/Output.o ./objects/seqcode/OutputR.o ./objects/seqcode/OutputH.o ./objects/seqcode/ProcessTargetGenesMaps.o ./objects/seqcode/ReadSAMFile.o ./objects/seqcode/ColorManager.o ./objects/cram/cram_codecs.o ./objects/cram/cram_decode.o ./objects/cram/cram_encode.o ./objects/cram/cram_index.o ./objects/cram/cram_io.o ./objects/cram/cram_samtools.o ./objects/cram/cram_stats.o ./objects/cram/files.o ./objects/cram/md5.o ./objects/cram/mFILE.o ./objects/cram/open_trace_file.o ./objects/cram/pooled_alloc.o ./objects/cram/rANS_static.o ./objects/cram/sam_header.o ./objects/cram/string_alloc.o ./objects/cram/thread_pool.o ./objects/cram/vlen.o ./objects/cram/zfio.o ./objects/htslib/bgzf.o ./objects/htslib/faidx.o ./objects/htslib/hfile.o ./objects/htslib/hfile_net.o ./objects/htslib/hts.o ./objects/htslib/kfunc.o ./objects/htslib/knetfile.o ./objects/htslib/kstring.o ./objects/htslib/regidx.o ./objects/htslib/sam.o ./objects/htslib/synced_bcf_reader.o ./objects/htslib/tbx.o ./objects/htslib/vcf.o ./objects/htslib/vcf_sweep.o ./objects/htslib/vcfutils.o ./objects/samtools/bam_aux.o ./objects/samtools/bam.o ./objects/samtools/bam_import.o ./objects/samtools/bam_plbuf.o ./objects/samtools/sam.o ./objects/samtools/sam_header.o -lm -lz -pthread
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/produceTSSplots.c -o ./objects/seqcode/produceTSSplots.o 
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/readargv_produceTSSplots.c -o ./objects/seqcode/readargv_produceTSSplots.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/ProcessTargetGenes.c -o ./objects/seqcode/ProcessTargetGenes.o
gcc  -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 -o bin/produceTSSplots ./objects/seqcode/produceTSSplots.o ./objects/seqcode/account.o ./objects/seqcode/readargv_produceTSSplots.o ./objects/seqcode/RequestMemory.o ./objects/seqcode/RequestMemoryBin.o ./objects/seqcode/GetFileSize.o ./objects/seqcode/ReadChrFile.o ./objects/seqcode/ReadRefgeneFile2.o ./objects/seqcode/Dictionary.o ./objects/seqcode/Output.o ./objects/seqcode/OutputR.o ./objects/seqcode/ProcessTargetGenes.o ./objects/seqcode/ReadSAMFile.o ./objects/seqcode/ColorManager.o ./objects/cram/cram_codecs.o ./objects/cram/cram_decode.o ./objects/cram/cram_encode.o ./objects/cram/cram_index.o ./objects/cram/cram_io.o ./objects/cram/cram_samtools.o ./objects/cram/cram_stats.o ./objects/cram/files.o ./objects/cram/md5.o ./objects/cram/mFILE.o ./objects/cram/open_trace_file.o ./objects/cram/pooled_alloc.o ./objects/cram/rANS_static.o ./objects/cram/sam_header.o ./objects/cram/string_alloc.o ./objects/cram/thread_pool.o ./objects/cram/vlen.o ./objects/cram/zfio.o ./objects/htslib/bgzf.o ./objects/htslib/faidx.o ./objects/htslib/hfile.o ./objects/htslib/hfile_net.o ./objects/htslib/hts.o ./objects/htslib/kfunc.o ./objects/htslib/knetfile.o ./objects/htslib/kstring.o ./objects/htslib/regidx.o ./objects/htslib/sam.o ./objects/htslib/synced_bcf_reader.o ./objects/htslib/tbx.o ./objects/htslib/vcf.o ./objects/htslib/vcf_sweep.o ./objects/htslib/vcfutils.o ./objects/samtools/bam_aux.o ./objects/samtools/bam.o ./objects/samtools/bam_import.o ./objects/samtools/bam_plbuf.o ./objects/samtools/sam.o ./objects/samtools/sam_header.o -lm -lz -pthread
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/recoverChIPlevels.c -o ./objects/seqcode/recoverChIPlevels.o 
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/readargv_recoverChIPlevels.c -o ./objects/seqcode/readargv_recoverChIPlevels.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/ReadProcessPeaksLevels.c -o ./objects/seqcode/ReadProcessPeaksLevels.o
gcc  -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 -o bin/recoverChIPlevels ./objects/seqcode/recoverChIPlevels.o ./objects/seqcode/account.o ./objects/seqcode/readargv_recoverChIPlevels.o ./objects/seqcode/RequestMemory.o ./objects/seqcode/RequestMemoryBin.o ./objects/seqcode/GetFileSize.o ./objects/seqcode/ReadChrFile.o ./objects/seqcode/Dictionary.o ./objects/seqcode/Output.o ./objects/seqcode/ReadProcessPeaksLevels.o ./objects/seqcode/ReadSAMFile.o ./objects/cram/cram_codecs.o ./objects/cram/cram_decode.o ./objects/cram/cram_encode.o ./objects/cram/cram_index.o ./objects/cram/cram_io.o ./objects/cram/cram_samtools.o ./objects/cram/cram_stats.o ./objects/cram/files.o ./objects/cram/md5.o ./objects/cram/mFILE.o ./objects/cram/open_trace_file.o ./objects/cram/pooled_alloc.o ./objects/cram/rANS_static.o ./objects/cram/sam_header.o ./objects/cram/string_alloc.o ./objects/cram/thread_pool.o ./objects/cram/vlen.o ./objects/cram/zfio.o ./objects/htslib/bgzf.o ./objects/htslib/faidx.o ./objects/htslib/hfile.o ./objects/htslib/hfile_net.o ./objects/htslib/hts.o ./objects/htslib/kfunc.o ./objects/htslib/knetfile.o ./objects/htslib/kstring.o ./objects/htslib/regidx.o ./objects/htslib/sam.o ./objects/htslib/synced_bcf_reader.o ./objects/htslib/tbx.o ./objects/htslib/vcf.o ./objects/htslib/vcf_sweep.o ./objects/htslib/vcfutils.o ./objects/samtools/bam_aux.o ./objects/samtools/bam.o ./objects/samtools/bam_import.o ./objects/samtools/bam_plbuf.o ./objects/samtools/sam.o ./objects/samtools/sam_header.o -lm -lz -pthread
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/scorePhastCons.c -o ./objects/seqcode/scorePhastCons.o 
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/readargv_scorePhastCons.c -o ./objects/seqcode/readargv_scorePhastCons.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/ReadWIGFile.c -o ./objects/seqcode/ReadWIGFile.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/ReadPhastConsFiles.c -o ./objects/seqcode/ReadPhastConsFiles.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/ReadRefgeneFileMarkExons.c -o ./objects/seqcode/ReadRefgeneFileMarkExons.o
gcc  -c -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 ./src/seqcode/ReadProcessPeaksPhastCons.c -o ./objects/seqcode/ReadProcessPeaksPhastCons.o
gcc  -I./include -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 -o bin/scorePhastCons ./objects/seqcode/scorePhastCons.o ./objects/seqcode/account.o ./objects/seqcode/readargv_scorePhastCons.o ./objects/seqcode/RequestMemory.o ./objects/seqcode/RequestMemoryBin.o ./objects/seqcode/GetFileSize.o ./objects/seqcode/ReadChrFile.o ./objects/seqcode/Dictionary.o ./objects/seqcode/Output.o ./objects/seqcode/ReadWIGFile.o ./objects/seqcode/ReadPhastConsFiles.o ./objects/seqcode/ReadRefgeneFileMarkExons.o ./objects/seqcode/ReadProcessPeaksPhastCons.o -lm
***** [OK] SeqCode suite successfully generated   *****